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A Primer of Molecular Population Genetics$
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Asher D. Cutter

Print publication date: 2019

Print ISBN-13: 9780198838944

Published to Oxford Scholarship Online: August 2019

DOI: 10.1093/oso/9780198838944.001.0001

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PRINTED FROM OXFORD SCHOLARSHIP ONLINE (oxford.universitypressscholarship.com). (c) Copyright Oxford University Press, 2021. All Rights Reserved. An individual user may print out a PDF of a single chapter of a monograph in OSO for personal use. date: 12 May 2021

Natural selection and demography as causes of molecular non-randomness

Natural selection and demography as causes of molecular non-randomness

(p.129) Chapter 7 Natural selection and demography as causes of molecular non-randomness
A Primer of Molecular Population Genetics

Asher D. Cutter

Oxford University Press

Chapter 7, “Natural selection and demography as causes of molecular non-randomness,” outlines the predictable molecular evolutionary patterns that arise when the Neutral Theory has its assumptions violated. It summarizes predictions about genetic variation, the shape of genealogies, and the accumulation of divergence between lineages when natural selection and non-standard demographic scenarios occur in populations. This chapter provides an overview of the general, qualitative impacts on molecular population genetic data by positive selection, purifying selection, and balancing selection, as well as by demographic population growth, contraction, and subdivision. It covers the concepts of selective sweeps, genetic hitchhiking, and background selection, placed in a heuristic context of skews in polymorphism, genealogies, the site frequency spectrum, and distinct metrics of divergence. This chapter also summarizes the consequences of genetic linkage to sex chromosomes and plastid genomes. This overview builds up intuition about selection, demography, and genome organization as important molecular population genetic factors that motivate further analysis with quantitative tests of neutrality.

Keywords:   natural selection, positive selection, balancing selection, purifying selection, genetic hitchhiking, background selection, population expansion, population contraction, population structure, genome structure

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